Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0889
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.4  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   5.9  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   7.9  

>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 286 FTFSFFYAKEIDLMYFKVSVLSKSLFSFRNLFDLVR*Y*VTEESQSMIYNVNIL 447
           F FSFFY + I    +   ++S      RNLF     Y + + S S I+  N L
Sbjct: 200 FGFSFFYLQSIVWHLYHSMIISLLPDGIRNLFLKAISYFLLDGSSSKIFYFNWL 253


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 578 YMLQKNNHFLFYTFSSKYRL 637
           ++L  N H+LFY F+  +R+
Sbjct: 317 FILADNRHYLFYVFNRLFRI 336


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 137 HNLLICKSAF*NIGHFEISAILLDSKFKNIVTTIYLNNVLFNE 265
           HN +I +  F N   + +   L +  F+   +T Y+N + F+E
Sbjct: 663 HNTMIVRRRFPNAYGWTVIKHLTEILFEQNTSTAYMNPISFDE 705


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,349
Number of Sequences: 5004
Number of extensions: 55477
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)