Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0889
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644...    28   6.1  

>04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,
            6441432-6441890,6441973-6442269,6442604-6443502,
            6443793-6443827,6443984-6444078,6444184-6444247,
            6446099-6446175,6446330-6446514
          Length = 940

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
 Frame = +2

Query: 215  FKNIVTTI-YLNNVLFNEF*AKRNYLPLVFFMQRKLI*CILKLVYCLNLCFRSGISSI-- 385
            F  IV  I YL+  +F  F   R+ +   + +   L+ C+  + Y   +CF  G + +  
Sbjct: 795  FSTIVKPIVYLS--MFYYFNNPRSTITDNYIILLALVYCVTGIGYTFAICFNPGSAQLVS 852

Query: 386  WCVN-----IKLPKSLKV*SIMLIYYKYVYEIDIFRNC 484
            W +      + + KS +  S+  +Y+  VY   + +NC
Sbjct: 853  WSLAYNSLWVVVQKSFRHSSLHALYFGSVYVWSVLQNC 890


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,039,318
Number of Sequences: 37544
Number of extensions: 263347
Number of successful extensions: 337
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)