Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0889
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)                 31   0.89 
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)           30   2.0  
SB_17681| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  

>SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)
          Length = 446

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 267 NSLNSTLFKYIVVTIFLNLESNKMADISKWPIFQNADLHINRLCICL 127
           N L   L   I + +  N   N MA+I    I+ N +L I  LC+CL
Sbjct: 77  NQLFINLIDLIYLDLSDNCLGNYMANICNKVIYSNVELWIEILCVCL 123


>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
          Length = 1207

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -1

Query: 672  ILVILNIVFFHFKRYFDEKV*NKK*LFFCSMYFFFSYVFVPIVILAYGDICYIFR*GR 499
            + V++ I+ F    YF EK  N K   F S+   F +  + +  + YGD+C + + G+
Sbjct: 1039 VSVMVPIILFSSMIYFAEKDANDK--NFQSIPESFWWAIITVTTVGYGDVCPVTKLGK 1094


>SB_17681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -1

Query: 672 ILVILNIVFFHFKRYFDEKV*NKK*LFFCSMYFFFSYVFVPIVILAYGDICYIFR*GR 499
           + V++ I+ F    YF EK  N K   F S+   F +  + +  + YGD+C + + G+
Sbjct: 130 VSVMVPIILFSSMIYFAEKDANDK--NFQSIPESFWWAIITVTTVGYGDVCPVTKLGK 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,830,061
Number of Sequences: 59808
Number of extensions: 346922
Number of successful extensions: 614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)