Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0889
         (693 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3622|AAF47022.3|  406|Drosophila melanogaster CG33150-P...    30   3.4  
AY075168-1|AAL68038.1|  484|Drosophila melanogaster AT05691p pro...    29   4.5  
AE014296-2251|AAN11830.1|  484|Drosophila melanogaster CG32119-P...    29   4.5  

>AE013599-3622|AAF47022.3|  406|Drosophila melanogaster CG33150-PA
           protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
 Frame = -1

Query: 357 RFRQYTNFKIHQINFLCIKKTKGK*FRFA*NSLNSTLFKYIVVTIFL---NLESNKMADI 187
           R  +    ++H  N +   K   + F+++   L    F    + +FL    +E+  MAD 
Sbjct: 232 RISEVQKIRMHHANLIDFTKAVNRTFQYSILLLFVGCFLNFNLVLFLVYQGIENPSMADF 291

Query: 186 SKWP-IFQNADLHINRLCICLNIDALESASAQHECRNFYNSAHTHTHKEVA*KLTYGLFK 10
           +KW  +     +H+ ++C  L+ +  +S   +H       S  ++  K++   +T+ + +
Sbjct: 292 TKWVCMLLWLAMHVGKVCSILHFN--QSIQNEHSTCLTLLSRVSYARKDIQDTITHFIIQ 349

Query: 9   L 7
           +
Sbjct: 350 M 350


>AY075168-1|AAL68038.1|  484|Drosophila melanogaster AT05691p
           protein.
          Length = 484

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 33  FTQPPCVCVCEQNYK 77
           FTQPPC C CEQ  +
Sbjct: 273 FTQPPCGCECEQQVR 287


>AE014296-2251|AAN11830.1|  484|Drosophila melanogaster CG32119-PA
           protein.
          Length = 484

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 33  FTQPPCVCVCEQNYK 77
           FTQPPC C CEQ  +
Sbjct: 273 FTQPPCGCECEQQVR 287


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,085,181
Number of Sequences: 53049
Number of extensions: 510366
Number of successful extensions: 1245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)