Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0889
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087081-18|AAK66030.1|  124|Caenorhabditis elegans Hypothetical...    29   2.4  
AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine re...    28   5.5  
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    27   9.6  

>AC087081-18|AAK66030.1|  124|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.1 protein.
          Length = 124

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
 Frame = -1

Query: 252 TLFKYIVVTIFLNLESNKMADISKWPIFQNADLHINRL----CIC--LNIDALESASAQH 91
           TL  Y++    +++ S+  A +   P+F NA L IN+L    C C  L ID  +  + + 
Sbjct: 24  TLAYYLIPLSIISISSSMRALLLFLPVFANACLKINQLAPPPCACNVLAIDPADVYNYEP 83

Query: 90  ECRNFY 73
           +  NF+
Sbjct: 84  QVSNFW 89


>AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine
           receptor, class t protein16 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -1

Query: 654 IVFFHFKRYFDEKV*NKK*LFFCSMYFFFSYVFVPIVILAYGDICYIF-R*GRNYYITQF 478
           +VF     +FD  V     ++  ++++F ++  +   +L YG I Y++ +  R+    Q 
Sbjct: 187 VVFNPMSWFFDPNVGKDPSIYISTIHYFNNFSVIICTVLFYGYIAYVYLKESRSIASKQL 246

Query: 477 LKISIS 460
            K  IS
Sbjct: 247 SKSQIS 252


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical
           protein D2045.2 protein.
          Length = 1792

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 156 LHINRLCICLNIDALESASAQHECRNFYNSAHTHTHKEVA*KLTYGLFK 10
           +++N L IC+N  A +S+  Q    NFY         +    L  GLFK
Sbjct: 322 VYMNNLKICMNGSASKSSRVQALTMNFYVLVAEKMRPQALQTLAPGLFK 370


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 597 LFFCSMYFFFSYVFVPIVILAYGDIC 520
           L F S+YF+FS V + ++ +++G  C
Sbjct: 3   LTFISIYFYFSTVLIELLDVSFGIYC 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,749,104
Number of Sequences: 27780
Number of extensions: 295186
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)