Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0889
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33080.2 68414.m04081 MATE efflux family protein similar to r...    29   2.9  
At1g33080.1 68414.m04082 MATE efflux family protein similar to r...    29   2.9  
At4g32050.1 68417.m04562 neurochondrin family protein contains P...    28   6.8  

>At1g33080.2 68414.m04081 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 490

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -1

Query: 168 QNADLHINRLCICLNIDALE 109
           +NA++ +N L IC+NI+ALE
Sbjct: 289 KNAEVALNALAICININALE 308


>At1g33080.1 68414.m04082 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 494

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -1

Query: 168 QNADLHINRLCICLNIDALE 109
           +NA++ +N L IC+NI+ALE
Sbjct: 289 KNAEVALNALAICININALE 308


>At4g32050.1 68417.m04562 neurochondrin family protein contains Pfam
           PF05536: Neurochondrin
          Length = 618

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 179 HFEISAILLDSKFKNIVTTIYLNNVLFNEF*AKRNYLPLVFFMQRKLI 322
           H EIS +L D  +K        +N    +   K+ YLP+VF +  K+I
Sbjct: 308 HVEISVLLNDLAYKKYEAP--KDNSTAEDILLKQRYLPIVFSLVEKII 353


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,264,064
Number of Sequences: 28952
Number of extensions: 248322
Number of successful extensions: 373
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)