Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0888
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              31   1.2  
SB_3684| Best HMM Match : fn3 (HMM E-Value=8e-11)                      30   2.0  
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       28   8.1  

>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 314 SLVGGHTLTLQLHFNCFHL*NNELPLTFDHFCF 412
           SL+G  + TL+LH +C    ++ +P+ FD+F F
Sbjct: 135 SLMGVSSQTLKLHLSCIKGIHHHVPVLFDYFHF 167


>SB_3684| Best HMM Match : fn3 (HMM E-Value=8e-11)
          Length = 862

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 123 HSSVVVTDLASFIFPIPTLTIACTSCYEYMVR 28
           +++V +T   +FIF +PTL +  +S Y Y  R
Sbjct: 443 NTTVGITQTYTFIFQVPTLDLQVSSLYAYTTR 474


>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = -1

Query: 583 KHLK*RNWTN*TSKSSRAELLAKETQEKKLRDYLLSILYFRQHDTKYNSPFLRRIRYKA 407
           KH K  + T  T++S+ + +       +KL DYL  ++   +H       FLRR+R+KA
Sbjct: 357 KHCKTSDDTIATNRSASSNVCQSSYGSEKLCDYLQRLIVKTEH-------FLRRMRWKA 408


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,373,034
Number of Sequences: 59808
Number of extensions: 320759
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)