Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0887
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4N5V6 Cluster: Putative uncharacterized protein; n=3; ...    37   0.41 
UniRef50_UPI00004984E4 Cluster: hypothetical protein 53.t00029; ...    33   5.0  
UniRef50_Q7RPL9 Cluster: Putative uncharacterized protein PY0143...    33   5.0  
UniRef50_Q8IJI6 Cluster: Putative uncharacterized protein; n=2; ...    33   6.6  

>UniRef50_Q4N5V6 Cluster: Putative uncharacterized protein; n=3;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 667

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = -3

Query: 265 NY*VKKFLMKLYTFNK*SK*-TQSNYVHLHSTKIERAQRYITHLNNNELNVLKKIEFCFL 89
           N+ + K  +KLYTF       T S+ V +  TK+     ++THLN+ E N+   IEF   
Sbjct: 399 NFKITKMCLKLYTFILFLIFPTTSHKVPIFFTKLFNTDTHLTHLNSPEQNLQPGIEFQHP 458

Query: 88  ITTNIGVN*FSVNVN 44
            TTN+     + NVN
Sbjct: 459 QTTNLNTT-TNNNVN 472


>UniRef50_UPI00004984E4 Cluster: hypothetical protein 53.t00029;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 53.t00029 - Entamoeba histolytica HM-1:IMSS
          Length = 692

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 324 FNFHFPPLIVYVF-SIIMTEYIFCVNID*SMPTAYRQMNFVWYETSLSYPS 473
           FNF F P IV +F SI +T  IF + +  S+P       + W+ T LSY S
Sbjct: 414 FNFSFGPAIVTLFASIFLT--IFSIFVIFSLPEFPFMWGYCWFTTILSYLS 462


>UniRef50_Q7RPL9 Cluster: Putative uncharacterized protein PY01439;
           n=7; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY01439 - Plasmodium yoelii yoelii
          Length = 4099

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = -3

Query: 325 KDSIMAIYKYKIDIYKTLHYNY*VKKFLMKLYTFNK*SK*TQSNYVHLHSTKIERAQRYI 146
           +D    + KYKI++ K + Y Y   K+L++L    + +K    N  HL + K+ ++   I
Sbjct: 749 EDMKNVLLKYKIELLKQI-YKYKAFKYLIRLLETERHNKSCYINKPHLENEKLTKSTSNI 807

Query: 145 THLNNNELN 119
              NNN+ N
Sbjct: 808 A--NNNKTN 814


>UniRef50_Q8IJI6 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 4431

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -3

Query: 283  YKTLHYNY*VKKFLMKLYTFNK*SK*TQSN----YVHLHSTKIERAQRYITHLNNNELNV 116
            YK+L+    + KF    YTF K  K  +SN    YV+ ++ + E +  YI H N N+ N+
Sbjct: 2571 YKSLNSKKHINKFFNDNYTFRKKKKRKKSNKKNLYVNKNNEETETSDYYIEH-NENKKNI 2629


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,976,345
Number of Sequences: 1657284
Number of extensions: 10885704
Number of successful extensions: 22306
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22298
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)