Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0887
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0758 - 22858221-22858367,22859362-22859460,22859505-228595...    30   1.5  
09_02_0555 - 10588685-10592038                                         29   3.5  
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675...    29   3.5  
10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454     28   6.1  
10_04_0010 - 7487455-7489490,7489569-7489980                           28   6.1  
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581...    28   6.1  
03_02_1029 - 13488535-13493037                                         28   6.1  
01_07_0262 + 42378465-42378634,42379100-42379230,42379307-423794...    28   8.1  

>12_02_0758 -
           22858221-22858367,22859362-22859460,22859505-22859557,
           22859674-22859728,22860204-22860284,22860779-22861213
          Length = 289

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 175 SNASVRNLTEFICFIC*KCKASLEISSPNNYNV 273
           +N+S+ N T  IC     CKAS++++ P  Y V
Sbjct: 124 TNSSIGNSTRHICLRRFACKASVKLTDPRKYFV 156


>09_02_0555 - 10588685-10592038
          Length = 1117

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +1

Query: 124 IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 237
           IH  S+++Y+++  ++W  +  R + EF+  C +C + KA
Sbjct: 698 IHSGSTKMYLNLKEKYWWVSMKREIAEFVALCDVCQRVKA 737


>08_02_0167 -
           13564466-13566227,13566361-13566644,13566684-13567540,
           13567684-13567957,13567973-13568218
          Length = 1140

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 124 IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 237
           IH  S+++Y+ +  ++W  +  R +TEF+  C +C   KA
Sbjct: 748 IHPGSTKMYLDMKEKYWWVSMKREITEFVALCEVCQHVKA 787


>10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454
          Length = 674

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 124 IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 237
           IH  S+++Y+ +  ++W  +  R + EF+  C +C + KA
Sbjct: 279 IHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKA 318


>10_04_0010 - 7487455-7489490,7489569-7489980
          Length = 815

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 124 IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 237
           IH  S+++Y+ +  ++W  +  R + EF+  C +C + KA
Sbjct: 441 IHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKA 480


>06_03_0650 +
           23157130-23157582,23157687-23157898,23157982-23158128,
           23158214-23158347,23158442-23158551,23158711-23158817,
           23159045-23159183,23159286-23159402,23159737-23159844,
           23159927-23159998,23160108-23160230,23160336-23160495,
           23160585-23160706,23160825-23160962,23161042-23161184,
           23161305-23161367,23161567-23161630,23161709-23161844,
           23162123-23162196,23162764-23162858,23162951-23162982,
           23163104-23163276
          Length = 973

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 202 QSNYVHLHSTKIERAQRYITHLNNNELNVLKKI 104
           ++NY+ + + KI   QRY   LN  ++  L K+
Sbjct: 427 KANYLPMEACKIVEGQRYTKRLNEKQITSLLKV 459


>03_02_1029 - 13488535-13493037
          Length = 1500

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 124  IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 237
            IH  S+++Y+ +  ++W  +  R + EF+  C +C + KA
Sbjct: 1081 IHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKA 1120


>01_07_0262 +
           42378465-42378634,42379100-42379230,42379307-42379466,
           42379547-42379850,42379936-42380037,42380583-42380606
          Length = 296

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -2

Query: 377 RHYDRKYIDNQWREVKVKRLHYGNL*VQNRY 285
           R+ +R+ I+  W E++V  L++GN+ ++N Y
Sbjct: 53  RYINRQIIEG-WEELRVNGLYHGNICLENVY 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,129,517
Number of Sequences: 37544
Number of extensions: 263396
Number of successful extensions: 504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)