Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0887
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7)                   31   0.67 
SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)                   31   0.89 
SB_33411| Best HMM Match : 7tm_1 (HMM E-Value=0.03)                    29   4.7  

>SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7)
          Length = 856

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -3

Query: 673 TITKMMYQHRSNEIIM*YYVKFIRKP-YLKDLSMAVSKY--*LKLXXXXIRNTKILHLFF 503
           TI  +  +HR+N ++   Y+K I  P Y +  +   SKY   + L     RNT++L  ++
Sbjct: 174 TINLVHQRHRNNRVLSTLYIKDIEIPGYYQHCTSKTSKYPGTINLVHQRHRNTRVLTTWY 233

Query: 502 I 500
           I
Sbjct: 234 I 234


>SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)
          Length = 1486

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -2

Query: 494 LKVQTVSRRIR*TRFIPYKVHLSVGSWHALVNIYTEDIFRHYDRKYIDNQWREVKVKR 321
           LKV   S R+     +P     ++G+W  L +    D+F+ Y++ Y+    RE ++++
Sbjct: 780 LKVDNCSVRVGNIDIMPISEVRNLGAWRNLQDTNRYDVFKTYEKLYLSKVEREDRLEQ 837


>SB_33411| Best HMM Match : 7tm_1 (HMM E-Value=0.03)
          Length = 1020

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -3

Query: 673 TITKMMYQHRSNEIIM*YYVKFIRKP-YLKDLSMAVSKY--*LKLXXXXIRNTKILHLFF 503
           TI  +  +HR+  ++  +Y+K I  P Y +  +   SKY   + L     RNT++L   +
Sbjct: 517 TINLVHQRHRNTRVLSTFYIKDIGIPGYYQPCTSKTSKYPGTINLVHRRHRNTRVLTTSY 576

Query: 502 I 500
           I
Sbjct: 577 I 577



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -3

Query: 673 TITKMMYQHRSNEIIM*YYVKFIRKP-YLKDLSMAVSKY--*LKLXXXXIRNTKILHLFF 503
           TI  +  +HR+  ++  +Y+K I  P Y +  +   S+Y   + L     RNT++L   +
Sbjct: 315 TINLVHQRHRNTRVLSSFYIKDIGIPGYYQPCTSETSEYPDTINLVHRRHRNTRVLSTLY 374

Query: 502 I 500
           I
Sbjct: 375 I 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,652,688
Number of Sequences: 59808
Number of extensions: 338708
Number of successful extensions: 691
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)