Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0887
         (693 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023496-1|AAY84896.1| 2042|Drosophila melanogaster LP04448p pro...    29   7.9  
AJ249115-1|CAB55772.1| 2050|Drosophila melanogaster microtubule ...    29   7.9  
AE014297-2141|AAF55269.2| 2049|Drosophila melanogaster CG5000-PA...    29   7.9  

>BT023496-1|AAY84896.1| 2042|Drosophila melanogaster LP04448p
           protein.
          Length = 2042

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 352 TISGGK*KLKDSIMAIYKYKIDIYKTLHYNY 260
           TISG K  LK+    + K+K+DI +++  NY
Sbjct: 637 TISGRKPGLKEMNFQVLKFKLDIIRSVAENY 667


>AJ249115-1|CAB55772.1| 2050|Drosophila melanogaster microtubule
           associated protein protein.
          Length = 2050

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 352 TISGGK*KLKDSIMAIYKYKIDIYKTLHYNY 260
           TISG K  LK+    + K+K+DI +++  NY
Sbjct: 636 TISGRKPGLKEMNFQVLKFKLDIIRSVAENY 666


>AE014297-2141|AAF55269.2| 2049|Drosophila melanogaster CG5000-PA
           protein.
          Length = 2049

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 352 TISGGK*KLKDSIMAIYKYKIDIYKTLHYNY 260
           TISG K  LK+    + K+K+DI +++  NY
Sbjct: 637 TISGRKPGLKEMNFQVLKFKLDIIRSVAENY 667


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,787,674
Number of Sequences: 53049
Number of extensions: 494686
Number of successful extensions: 790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)