Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0887
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13410.1 68417.m02094 glycosyl transferase family 2 protein s...    28   5.1  
At1g10200.1 68414.m01150 transcription factor LIM, putative stro...    28   6.8  
At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containi...    27   8.9  
At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containi...    27   8.9  
At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containi...    27   8.9  

>At4g13410.1 68417.m02094 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 537

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 575 HTKILEIWFPNKFYIISHNYFI*TVLVHHF 664
           H K ++IW   KFY+I   +F+  ++VH F
Sbjct: 360 HNKRVKIW--KKFYVIYSFFFLRKIVVHFF 387


>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
           similarity to transcription factor Ntlim1 [Nicotiana
           tabacum] GI:5689136, LIM domain protein WLIM-1
           [Helianthus annuus] GI:5070280; contains Pfam profile
           PF00412: LIM domain
          Length = 190

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 211 CFIC*KCKASLEISSPNNY-NVMFCK 285
           CF C  CK +L++S+ N++  V++C+
Sbjct: 34  CFRCHHCKGTLKLSNYNSFEGVLYCR 59


>At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (5 copies)
          Length = 731

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 624 DIM*NLFGNHISRILVWLCPNTSLN 550
           D+M N +G+H+ R L+ LC   SL+
Sbjct: 192 DMMCNCYGSHVLRRLLCLCKGVSLD 216


>At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (5 copies)
          Length = 731

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 624 DIM*NLFGNHISRILVWLCPNTSLN 550
           D+M N +G+H+ R L+ LC   SL+
Sbjct: 192 DMMCNCYGSHVLRRLLCLCKGVSLD 216


>At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (5 copies)
          Length = 753

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 624 DIM*NLFGNHISRILVWLCPNTSLN 550
           D+M N +G+H+ R L+ LC   SL+
Sbjct: 214 DMMCNCYGSHVLRRLLCLCKGVSLD 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,149,229
Number of Sequences: 28952
Number of extensions: 243641
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)