Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0886
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    62   7e-11
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    33   0.050
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    29   0.62 
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   1.9  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   4.4  

>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 25/57 (43%), Positives = 33/57 (57%)
 Frame = +1

Query: 85  ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFVDNLITDDVRNNSAWNQRY 255
           ELE T      D KNYH W +R W ++ F  Y +EL   + L+  D+ NNSAWN R+
Sbjct: 130 ELEFTKKMFEIDSKNYHVWSYRVWILQNFNDYSQELKLTNELLEKDIYNNSAWNHRF 186



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +1

Query: 85  ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFVDNLITDDVRNNSAWNQR 252
           ELE   +      KNY  W HRQ  +     YE+EL+F   +   D +N   W+ R
Sbjct: 96  ELEWLDEIAEDFQKNYQVWHHRQKILSLTKNYERELEFTKKMFEIDSKNYHVWSYR 151



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 21/51 (41%), Positives = 31/51 (60%)
 Frame = +3

Query: 252 IFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLLIHDKRGLS 404
           +F  +  + WS    ++E+ Y  +KI F  +N+SAWNYL G+L  DK G S
Sbjct: 189 LFETSKVVSWS---LEEELNYLKDKILFAPDNQSAWNYLCGVL--DKSGPS 234



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 88  LELTGDALLQDPKNYHAWQHR-QWAIKTFGLYEKELDFVDNLITDDVRNNSAWNQR 252
           L LTG  ++ +P +Y  W +R Q    T    + EL+++D +  D  +N   W+ R
Sbjct: 62  LNLTGFLIMNNPAHYTVWAYRFQILNHTPSYIDNELEWLDEIAEDFQKNYQVWHHR 117



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
 Frame = +1

Query: 55  LVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAI-KTFGL----YEKELDFVDNLITD 219
           +++   D + EL+LT + L +D  N  AW HR + + +T  +     E+EL+++ + I  
Sbjct: 154 ILQNFNDYSQELKLTNELLEKDIYNNSAWNHRFYVLFETSKVVSWSLEEELNYLKDKILF 213

Query: 220 DVRNNSAWN 246
              N SAWN
Sbjct: 214 APDNQSAWN 222



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +2

Query: 23  KNYQVWHHRR 52
           KNYQVWHHR+
Sbjct: 109 KNYQVWHHRQ 118


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 32.7 bits (71), Expect = 0.050
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = +1

Query: 85  ELELTGDALLQDPKNYHAWQHRQWAIKTF------GLYEKELDFVDNLITDDVRNNSAWN 246
           E+ +T   L  D +N+H W +R++ +          L +KE+++  + I  +  N SA +
Sbjct: 129 EMMITEKLLSADARNFHGWHYRRYVVSQIERAGNCSLAKKEMEYTTSAIATNFSNFSALH 188

Query: 247 QR 252
            R
Sbjct: 189 NR 190



 Score = 31.1 bits (67), Expect = 0.15
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 121 PKNYHAWQHRQWAIKT--FGLYEKELDFVDNLITDDVRNNSAWNQR 252
           PK Y  + HR+W ++   +  +  E+   + L++ D RN   W+ R
Sbjct: 105 PKVYWIFNHRRWCLENAPYPNWNYEMMITEKLLSADARNFHGWHYR 150



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 20  PKNYQVWHHRRFW*NGCKIPQWN 88
           PK Y +++HRR+       P WN
Sbjct: 105 PKVYWIFNHRRWCLENAPYPNWN 127


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 470 VSLHHRCMRGCY*KKDTNCF-HNADRACGVMSGVGH*IRHKLES 598
           +  H+ C + CY K  T C   ++D A      + H I H  ES
Sbjct: 435 IDCHYTCHKKCYPKVVTKCISKSSDSASSEYEKINHRIPHHFES 478


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +3

Query: 243 ESAIFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVIT 422
           E  + + +    WS    +Q+V  TL +INFV  N           I  K G   ++++ 
Sbjct: 572 EICLEIKSGTFSWSKKTLKQQVTPTLRQINFVAKNGEL------TCIFGKVGAGKSSLLE 625

Query: 423 SFCEELYKN 449
           +    +YKN
Sbjct: 626 ACMGNMYKN 634


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 109 LLQDPKNYHAWQHRQWAI-KTFGLYEKELD 195
           LLQ+ K Y  W+ R  A+ K FG  E +LD
Sbjct: 119 LLQEAKTYEEWKERARALDKYFGNDEWKLD 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,254
Number of Sequences: 5004
Number of extensions: 64368
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)