Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0886
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0722 + 19729331-19729582,19730535-19730644,19730810-197309... 77 2e-14
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 44 8e-05
01_06_0285 + 28183108-28183209,28183495-28183754,28183950-281842... 35 0.069
11_06_0510 + 24420402-24422582 32 0.37
11_06_0514 - 24477720-24479915 31 1.1
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 30 1.5
>09_04_0722 +
19729331-19729582,19730535-19730644,19730810-19730930,
19731080-19731175,19731429-19731838,19732251-19732309,
19733235-19733287,19733432-19733485
Length = 384
Score = 76.6 bits (180), Expect = 2e-14
Identities = 32/58 (55%), Positives = 39/58 (67%)
Frame = +1
Query: 85 ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFVDNLITDDVRNNSAWNQRYL 258
E E T L D KNYHAW HRQW ++ G +E EL + + L+ +DV NNSAWNQRYL
Sbjct: 139 EHEFTRKILSMDAKNYHAWSHRQWVLQALGGWETELQYCNQLLEEDVFNNSAWNQRYL 196
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 118 DPKNYHAWQHRQWAIKTFG--LYEKELDFVDNLITDDVRNNSAWNQR 252
+PKNY W H++W + G + KE +F +++ D +N AW+ R
Sbjct: 114 NPKNYQIWHHKRWLAEKLGPDIANKEHEFTRKILSMDAKNYHAWSHR 160
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/89 (25%), Positives = 42/89 (47%)
Frame = +3
Query: 273 LGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYKNK 452
LG + EV YT+ I NES W YL+GL + L + I+ C ++ K+
Sbjct: 204 LGGLAAMRDSEVDYTVGAILANPQNESPWRYLKGLYKGENNLLMADERISDVCLKVLKHD 263
Query: 453 CRSPFLLAFIIDVCEDAIKKKIQTASTMQ 539
F L+ ++D+ + ++ + T++
Sbjct: 264 STCVFALSLLLDLLQIGLQPSDELKGTIE 292
Score = 34.7 bits (76), Expect = 0.069
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 88 LELTGDALLQDPKNYHAWQHRQWAIKTFGL-YEKELDFVDNLITDDVRNNSAWNQR 252
L LT + + +P NY W R+ ++ +E+DFVD + + +N W+ +
Sbjct: 69 LHLTAEVIDLNPGNYTVWHFRRLVLEALDADLREEMDFVDRIAECNPKNYQIWHHK 124
Score = 31.9 bits (69), Expect = 0.48
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2
Query: 17 SPKNYQVWHHRRF 55
+PKNYQ+WHH+R+
Sbjct: 114 NPKNYQIWHHKRW 126
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 85 ELELTGDALLQDPKNYHAWQHRQWAI--KTFGL-YEKELDFVDNLITDDVRNNSAWNQR 252
EL + AL Q+PK+Y AW HR+W + K + ++ E +D L+ D RN WN R
Sbjct: 89 ELRVVEVALRQNPKSYGAWYHRKWLLNQKLAPVDFKCEFGLLDKLLKVDARNFHGWNYR 147
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +1
Query: 103 DALLQ-DPKNYHAWQHRQWAIKTFGL-YEKELDFVDNLITDDVRNNSAWNQR 252
D LL+ D +N+H W +R++ + G+ E+EL + + I+D+ N SAW+ R
Sbjct: 131 DKLLKVDARNFHGWNYRRFLARFMGVPEEEELKYTMDKISDNFSNYSAWHNR 182
>01_06_0285 +
28183108-28183209,28183495-28183754,28183950-28184237,
28184385-28184495,28184815-28184905,28185146-28185214,
28185627-28185716,28185887-28185937,28186040-28186258,
28186371-28186490
Length = 466
Score = 34.7 bits (76), Expect = 0.069
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 85 ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEK---ELDFVDNLITDDVRNNSAWNQR 252
EL+L L PKN W HR+W IK + + EL +++++ + S N R
Sbjct: 233 ELQLCALILSYSPKNESTWSHRRWVIKKVSEHNQDVSELIEMESVLVKQIAEKSKMNYR 291
>11_06_0510 + 24420402-24422582
Length = 726
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Frame = +1
Query: 85 ELELTGDALLQDPKNYH-AWQHR-QWAIKTFGLYEK 186
+L+ ++ +DPK+Y A +HR QWA++ GLY+K
Sbjct: 448 QLKSKASSISKDPKSYRKAGEHRGQWALQRKGLYQK 483
>11_06_0514 - 24477720-24479915
Length = 731
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +1
Query: 85 ELELTGDALLQDPKNYH-AWQHR-QWAIKTFGLYEK 186
+L+ ++ +DPK+Y +HR QWA++ GLY+K
Sbjct: 448 QLKSKASSISKDPKSYRKVGEHRGQWALQRKGLYQK 483
>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -3
Query: 508 LIASSHTSMMKANRKGDRHLFLYNSSQNDVITAFPLRPRLSCISSPLK*FHALSLFLTKL 329
LI ++M K D +L NSS +I L+P S +++PLK + FL ++
Sbjct: 1117 LIQIFGSAMQKQESNADLAYWLSNSSSLLIILQKSLKPVGSSVTTPLKRTQTQTSFLGRM 1176
Query: 328 IF 323
+F
Sbjct: 1177 VF 1178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,751,082
Number of Sequences: 37544
Number of extensions: 388167
Number of successful extensions: 849
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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