Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0886
(681 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15238| Best HMM Match : PPTA (HMM E-Value=2.9e-38) 102 3e-22
SB_51889| Best HMM Match : PPTA (HMM E-Value=6.3e-34) 37 0.017
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_13842| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_33644| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 29 4.6
SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10) 28 8.0
>SB_15238| Best HMM Match : PPTA (HMM E-Value=2.9e-38)
Length = 183
Score = 102 bits (244), Expect = 3e-22
Identities = 41/68 (60%), Positives = 52/68 (76%)
Frame = +1
Query: 52 VLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFVDNLITDDVRN 231
+LV+WL D + ELE T L D KNYHAWQHRQW I+ F L++ EL++VD L+ +D+RN
Sbjct: 98 MLVDWLGDGSQELEFTQSILRPDAKNYHAWQHRQWVIRAFNLWDNELEYVDKLLAEDLRN 157
Query: 232 NSAWNQRY 255
NSAWNQRY
Sbjct: 158 NSAWNQRY 165
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +1
Query: 70 QDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFVDNLITDDVRNNSAWNQ 249
+D ELE + PKNY W HR+ + G +EL+F +++ D +N AW
Sbjct: 70 KDLQEELEYVSRVIEDQPKNYQVWYHRRMLVDWLGDGSQELEFTQSILRPDAKNYHAWQH 129
Query: 250 R 252
R
Sbjct: 130 R 130
Score = 31.1 bits (67), Expect = 0.86
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +2
Query: 11 KNSPKNYQVWHHRR 52
++ PKNYQVW+HRR
Sbjct: 84 EDQPKNYQVWYHRR 97
>SB_51889| Best HMM Match : PPTA (HMM E-Value=6.3e-34)
Length = 428
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 73 DPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGL-YEKELDFVDNLITDDVRNNSAWNQ 249
D T EL L L D +N+H W +R+ K + +E F IT++ N S+W+
Sbjct: 124 DWTQELLLCNMFLSFDERNFHCWDYRRIVTKKANITAHEEFKFSTEKITENFSNYSSWHY 183
Query: 250 R 252
R
Sbjct: 184 R 184
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 85 ELELTGDALLQDPKNYHAWQHRQWAIKTFGL--YEKELDFVDNLITDDVRNNSAWNQR 252
EL L +PK+Y W HRQW + + +EL + ++ D RN W+ R
Sbjct: 92 ELAFLQGCLKVNPKSYGVWFHRQWVNEFIPAPDWTQELLLCNMFLSFDERNFHCWDYR 149
>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1373
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +2
Query: 8 RKNSPKNYQVWHHRRFW*NGCKIPQWNLN*QAMHFYKIQRTIMLGNIGNGLSKHLGFTKR 187
R+ K W+HR+FW C+ + + + + + LG G G KH+ T+R
Sbjct: 1129 RQADGKTVVAWYHRQFW-EACE-RMYLKDGVKVDAHALMAEFFLGTWGGGRKKHIVLTRR 1186
>SB_13842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 390 KRGLSGNAVITSFCEELYKNKCRSPFLLAFIIDVCEDAIKKKIQTASTM 536
K GLS + +E+Y SP+L+A +ID+ E+ +++ T+
Sbjct: 5 KTGLSKYPGLKDSLDEMYTRGIDSPYLMATLIDIYEEEMEENNSEPRTL 53
>SB_33644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 678
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 447 NKCRSPFLLAFIIDVCEDAIKKKIQTAST 533
N C +PFL A+ DV + A+KK++ S+
Sbjct: 375 NACMNPFLFAYRNDVFKTALKKQLGLVSS 403
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 291 SNPTSLNYCSLQISLIPR*IITNVVRDQIVD 199
SNP + YC+ +IS+ P ++ +V+ I+D
Sbjct: 397 SNPCRIQYCTQEISMTPIHVLLLIVKAPILD 427
>SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 252 IFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAW 359
I + NN + W+DL C+ ++ Y EK + + +AW
Sbjct: 131 IKIWNNTVTWADLGCETKLPYVCEKSRDLYLSFAAW 166
>SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10)
Length = 452
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 88 LELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKE-LDFVDNLITDDVRNNSAWNQRYL 258
++L ++L P NY +W R A + YE+ LDF + ++ N W + YL
Sbjct: 304 IDLYNKSILASPINYFSWCQRATAFISLNKYEESLLDF-----EECIKLNPKWVKGYL 356
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,143,605
Number of Sequences: 59808
Number of extensions: 467985
Number of successful extensions: 1275
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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