Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0886
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038615-3|AAB94144.1|  328|Caenorhabditis elegans Hypothetical ...    66   2e-11
AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical ...    44   8e-05
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF101318-5|AAC69347.1|  574|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AF038615-3|AAB94144.1|  328|Caenorhabditis elegans Hypothetical
           protein R02D3.5 protein.
          Length = 328

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = +1

Query: 85  ELELTGDALLQDPKNYHAWQHRQWAIKTFGL-YEKELDFVDNLITDDVRNNSAWNQRY 255
           EL    + +  + KNYHAWQHRQW ++TF +  EKEL F  +++  D RNNSA+N RY
Sbjct: 133 ELHFCSEVIRDENKNYHAWQHRQWVVRTFKVPLEKELTFALHMLLLDNRNNSAYNYRY 190



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
 Frame = +3

Query: 327 INFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYK---NKCRSPFLLAFIIDVCE 497
           I  + NNESAWNYL GLLI    G++ N+ + SF E+LY+    + RSPFLLAFI D+  
Sbjct: 216 IENIPNNESAWNYLAGLLI--TNGVTSNSDVVSFVEDLYETTPEEKRSPFLLAFIADMML 273

Query: 498 DAIKKK 515
           + I+ +
Sbjct: 274 ENIENQ 279



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +1

Query: 55  LVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFG--LYEKELDFVDNLITDDVR 228
           L E   D   E+    D + + PKNY  W HR++ ++T G      EL F   +I D+ +
Sbjct: 87  LTELGWDLKKEMRYLSDIIQESPKNYQVWHHRRFIVETIGESAVNDELHFCSEVIRDENK 146

Query: 229 NNSAWNQR 252
           N  AW  R
Sbjct: 147 NYHAWQHR 154



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 11  KNSPKNYQVWHHRRF 55
           + SPKNYQVWHHRRF
Sbjct: 106 QESPKNYQVWHHRRF 120



 Score = 36.7 bits (81), Expect = 0.015
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 88  LELTGDALLQDPKNYHAWQHRQWAIKTFGL-YEKELDFVDNLITDDVRNNSAWNQR 252
           + L  D +  +P NY  WQ+R+  +   G   +KE+ ++ ++I +  +N   W+ R
Sbjct: 63  MALLEDCIRLNPANYTVWQYRRVCLTELGWDLKKEMRYLSDIIQESPKNYQVWHHR 118


>AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical
           protein M57.2 protein.
          Length = 580

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 85  ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYE-KELDFVDNLITDDVRNNSAWNQR 252
           EL L   AL  D +N+H W HR+   +     E +EL+F + LI D+  N SAW+ R
Sbjct: 144 ELALCEKALQLDCRNFHCWDHRRIVARMAKRSEAEELEFSNKLINDNFSNYSAWHYR 200



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +1

Query: 85  ELELTGDALLQDPKNYHAWQHRQWAIKTFGL--YEKELDFVDNLITDDVRNNSAWNQR 252
           EL L+ + +  +PK+Y AW  R WA++      ++KEL   +  +  D RN   W+ R
Sbjct: 108 ELFLSYECIKSNPKSYSAWYQRAWALQRQSAPDFKKELALCEKALQLDCRNFHCWDHR 165


>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
            T20G5.1 protein.
          Length = 1681

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
 Frame = +3

Query: 291  ICQQEVCYTLEKI-NFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYK------- 446
            IC++  CY  E++ NF+K  +   + L  +++ D+  +  + V+  +  +L K       
Sbjct: 749  ICRESQCYDAERVKNFLKEAKLN-DQLPLIIVCDRHNMVHDLVLYLYRNQLQKYIEVFVQ 807

Query: 447  --NKCRSPFLLAFIIDV-C-EDAIKKKI 518
              N  R P ++  ++DV C EDAIK+ I
Sbjct: 808  KVNAARLPIVVGALLDVDCSEDAIKQLI 835


>Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical
           protein T01G9.3 protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 273 LGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLLIH 386
           LGW+    Q+E+       NF+KN E +W Y    LIH
Sbjct: 327 LGWA----QEELTSIALSGNFLKNFEESWTYTLKSLIH 360


>Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical
           protein F16A11.1 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 297 QQEVCYTLEKINFVKNNESAWNYLRGLLIH--DKRGLSGNAVITSFCEE 437
           +QE   +L K+NF+ + E  W  +   LI+   +    G AVI+ F +E
Sbjct: 130 EQEPPQSLLKLNFIADEEKGWTMVVRALIYTIPENDPLGPAVISLFLDE 178


>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical
           protein C34G6.1 protein.
          Length = 1768

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 520 KLLPQCRQSLWSYVRRWPLDTTQIRK*ILEFI*CERY 630
           +L  QC Q+L++        T  +   +LEFI CERY
Sbjct: 498 QLRTQCAQALYTIANTCVCATKLLWPYLLEFICCERY 534


>AF101318-5|AAC69347.1|  574|Caenorhabditis elegans Hypothetical
           protein Y73C8C.7 protein.
          Length = 574

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 111 KCIACQFKFHCGILQPFYQNLRWCHT 34
           KC+ C+ K+H G  Q +++  R C T
Sbjct: 534 KCLDCKRKYHTGCAQKWFKVKRICPT 559


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,537,792
Number of Sequences: 27780
Number of extensions: 359266
Number of successful extensions: 877
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)