Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0886
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   8.2  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   8.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   8.2  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 168 CFDSPLPMLP 139
           CF+ PLP LP
Sbjct: 470 CFEEPLPSLP 479


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 122 GSCRSASPVNSSSIVGSCSHSTKTY 48
           G+C   SP  +  I    SH  +TY
Sbjct: 78  GACPQCSPEETRQIKKVLSHIQRTY 102


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 122 GSCRSASPVNSSSIVGSCSHSTKTY 48
           G+C   SP  +  I    SH  +TY
Sbjct: 78  GACPQCSPEETRQIKKVLSHIQRTY 102


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = -2

Query: 590 ICVVSSGQXXXXXXXXXXXCGSSLYLFFNSILAYIYDE 477
           IC+V SG              ++   F + +  Y+Y+E
Sbjct: 7   ICIVGSGNWGSTIAKIIGINAANFSNFEDRVTMYVYEE 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,694
Number of Sequences: 438
Number of extensions: 4580
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)