Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0886
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59380.1 68416.m06622 farnesyltransferase alpha subunit, puta...    75   3e-14
At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni...    42   3e-04
At1g10095.1 68414.m01138 protein prenyltransferase alpha subunit...    36   0.033
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    35   0.057
At4g25870.1 68417.m03720 expressed protein contains Pfam profile...    31   0.93 
At1g52315.1 68414.m05903 expressed protein                             29   3.8  
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea...    28   5.0  
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea...    28   5.0  
At5g01240.2 68418.m00032 amino acid permease, putative strong si...    27   8.7  
At5g01240.1 68418.m00031 amino acid permease, putative strong si...    27   8.7  
At3g55510.1 68416.m06164 expressed protein                             27   8.7  

>At3g59380.1 68416.m06622 farnesyltransferase alpha subunit,
           putative / FTA, putative / protein farnesyltransferase,
           putative similar to farnesyltransferase alpha subunit
           [GI:2246442][Pisum sativum]
          Length = 326

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 32/57 (56%), Positives = 38/57 (66%)
 Frame = +1

Query: 85  ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFVDNLITDDVRNNSAWNQRY 255
           ELE T   L  D K+YHAW HRQW ++  G +E ELD+   L+  DV NNSAWNQRY
Sbjct: 130 ELEFTRRVLSLDAKHYHAWSHRQWTLRALGGWEDELDYCHELLEADVFNNSAWNQRY 186



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = +3

Query: 273 LGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFC-EELYKN 449
           LG  + + + EV YT++ I     NES+W YL+ L   DK     +  ++S C   L + 
Sbjct: 195 LGGLEAMRESEVSYTIKAILTNPANESSWRYLKALYKDDKESWISDPSVSSVCLNVLSRT 254

Query: 450 KCRSPFLLAFIIDVCEDAIK 509
            C   F L+ ++D+  D ++
Sbjct: 255 DCFHGFALSTLLDLLCDGLR 274



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 85  ELELTGDALLQDPKNYHAWQHRQWAIKTFG--LYEKELDFVDNLITDDVRNNSAWNQR 252
           ELE        + KNY  W HR+W  +  G  +  +EL+F   +++ D ++  AW+ R
Sbjct: 94  ELEFIERIAEDNSKNYQLWHHRRWVAEKLGPDVAGRELEFTRRVLSLDAKHYHAWSHR 151



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +1

Query: 88  LELTGDALLQDPKNYHAWQHRQWAIKTFG--LYEKELDFVDNLITDDVRNNSAWNQR 252
           L LT + LL +  NY  W  R+  ++     L+E EL+F++ +  D+ +N   W+ R
Sbjct: 60  LRLTEETLLLNSGNYTVWHFRRLVLEALNHDLFE-ELEFIERIAEDNSKNYQLWHHR 115



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +2

Query: 11  KNSPKNYQVWHHRRF 55
           +++ KNYQ+WHHRR+
Sbjct: 103 EDNSKNYQLWHHRRW 117


>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 683

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +1

Query: 85  ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEK-ELDFVDNLITDDVRNNSAWNQR 252
           EL L       D +N+HAW +R++ ++     E+ EL + D++I ++  N SAW+ R
Sbjct: 125 ELRLLEKFQKLDSRNFHAWNYRRFVVELTNRSEQDELQYTDDMINNNFSNYSAWHNR 181



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 85  ELELTGDALLQDPKNYHAWQHRQWAI-KTFGLYEKELDFVDNLITDDVRNNSAWNQR 252
           EL +   AL Q+ K+Y AW HR+W + K       EL  ++     D RN  AWN R
Sbjct: 90  ELRVVESALRQNFKSYGAWHHRKWVLSKGHSSVGNELRLLEKFQKLDSRNFHAWNYR 146


>At1g10095.1 68414.m01138 protein prenyltransferase alpha
           subunit-related contains weak hit to Pfam profile
           PF01239: Protein prenyltransferase alpha subunit repeat
          Length = 431

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
 Frame = +1

Query: 79  TMELELTGDALLQDPKNYHAWQHRQWAIKTFG--------LYEKELDFVDNLITDDVRNN 234
           T EL L+G  L   PK+   W HR+W IK           +  KE + V+++      N 
Sbjct: 155 TEELRLSGLILSNSPKSESTWSHRRWIIKMISQSFSTLQEIITKESELVESIGERSKMNY 214

Query: 235 SAWNQR 252
            AW  R
Sbjct: 215 RAWYHR 220


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 85  ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFVDNLITD 219
           EL +  +AL ++ K+Y AW HR+W +   G Y   L+    L+ D
Sbjct: 87  ELGVVQNALERNVKSYGAWYHRKWVLSKKGHYYPSLENELQLLND 131



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +1

Query: 103 DALLQDP-KNYHAWQHRQWAIK-TFGLYEKELDFVDNLITD-DVRNNSAWNQR 252
           D    DP +N+HAW +R++ ++ T    E EL +  ++I+D      SAW+ R
Sbjct: 142 DEKQDDPSRNFHAWNYRRFVVELTKTSEEDELQYTTDMISDISFTIYSAWHYR 194


>At4g25870.1 68417.m03720 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 389

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 139 WQHRQWAIKTFGLYEKELDFVDNLITDDV 225
           W  R+W  KT+G  E  L+F+ N+ ++D+
Sbjct: 307 WSERRWHPKTYGGNEISLEFMKNVTSEDM 335


>At1g52315.1 68414.m05903 expressed protein
          Length = 347

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 312 YTLEKINFVKNNESAWNYLRG-LLIHDKRGLSGNAVITSFCEELYKN 449
           Y  + +NF+KN + +  Y R  LL+ + R +S   +I  FC+ + +N
Sbjct: 39  YKTDIVNFLKNGQDSEAYRRAELLLEELRIISCYDLIERFCDCISEN 85


>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
           family protein similar to YTM1 - Homo sapiens,
           EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
           repeat (7 copies,1 weak);
          Length = 402

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 86  SIVGSCSHSTKTYGGAIPDNSLVNS 12
           S  GSCSH  + + GAI   +LVNS
Sbjct: 137 SSAGSCSHILEGHSGAISSVALVNS 161


>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
           family protein similar to YTM1 - Homo sapiens,
           EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
           repeat (7 copies,1 weak);
          Length = 433

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 86  SIVGSCSHSTKTYGGAIPDNSLVNS 12
           S  GSCSH  + + GAI   +LVNS
Sbjct: 137 SSAGSCSHILEGHSGAISSVALVNS 161


>At5g01240.2 68418.m00032 amino acid permease, putative strong
           similarity to AUX1 GI:1531758 from [Arabidopsis
           thaliana]; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 408

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 136 HDSSLDLVEVHRLSIQVPLWDLAAILP 56
           H  SL L  + RL + VP+W LA I P
Sbjct: 271 HTKSLCLRALVRLPVVVPIWFLAIIFP 297


>At5g01240.1 68418.m00031 amino acid permease, putative strong
           similarity to AUX1 GI:1531758 from [Arabidopsis
           thaliana]; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 488

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 136 HDSSLDLVEVHRLSIQVPLWDLAAILP 56
           H  SL L  + RL + VP+W LA I P
Sbjct: 351 HTKSLCLRALVRLPVVVPIWFLAIIFP 377


>At3g55510.1 68416.m06164 expressed protein
          Length = 594

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 429 CEELYKNKCRSPFLLAFIIDVCEDAIKKKIQTASTMQTEPVELCQ-ALATR-YDTN*KVN 602
           C+    N  + PFL   ++++C   ++K    AS   T+  +L + ALAT+  +   K++
Sbjct: 305 CDIPKANSEQRPFLRDSLVELCSQDVQKSYTKASVSITQLAKLLKMALATKNKEAVEKIH 364

Query: 603 IGIYL 617
            G Y+
Sbjct: 365 SGEYI 369


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,515,771
Number of Sequences: 28952
Number of extensions: 326258
Number of successful extensions: 751
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)