Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0885
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           28   1.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.3  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    26   5.7  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    25   7.5  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   9.9  

>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 138 VKFRTNTYLVVIFHHETLDACPPESSALTSSKI-RKKPRSYQW-RPISGDTKLIW 296
           V   TN  L ++F +  L +CP       +S + RK+  S+ + +P+    +++W
Sbjct: 285 VALYTNLLLAIVFVYNYLPSCPSLYDLFFASPVFRKRTSSFYFSQPLKATKEVLW 339


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 153  NTYLVVIFHHETLDACPPESSALTSSKIRKKPRSYQWRPISGDTKLIWPRIDGMDF 320
            N YL + F  + LDACP       S +I K  ++Y         KL +  I G +F
Sbjct: 1493 NNYLCLYFW-QVLDACPRNVLHSLSLEIWKCYKAYDITEFPDSLKLFFSDIMGWNF 1547


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 10  PCRHIATILKSIKCQKCQSEPI 75
           PC+H + +LK IK  + +++PI
Sbjct: 226 PCKHASVLLKLIKQHRERNDPI 247


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = -2

Query: 606 FWYDIFAIMGFYFTQSPSCVGLQXGYRLWFV 514
           +W+ +F    FY T    C G   G   W +
Sbjct: 200 WWWMLFVTASFYHTTFEKCTGFFSGILEWSI 230


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 255 YQWRPISGDTKLIWPRIDGMDFTSMWFQHDRAT 353
           Y+W   +GD     P+ID   F ++  QH  AT
Sbjct: 497 YKWELNAGDGAFYGPKIDITVFDALKRQHQCAT 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,014
Number of Sequences: 5004
Number of extensions: 49642
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)