Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0885
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0052 - 867152-867255,867322-867433,868996-869066,869526-86...    30   1.9  
02_05_0793 - 31782203-31782355,31782958-31783096,31783407-317837...    30   1.9  
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26...    28   5.9  
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208...    28   5.9  
01_06_0091 - 26363070-26363361,26363467-26363625,26363708-263638...    28   5.9  

>09_01_0052 -
           867152-867255,867322-867433,868996-869066,869526-869623,
           869988-870060,872280-872670
          Length = 282

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +3

Query: 105 LTAHSGHIG*AVKFRTNTYLVVIFHHETLDACPPESSALTSSKIRKKPRSYQWRPISGDT 284
           LTAHSG    A     + Y    F  +TLD     ++ + S  I K  R   +R ++ D 
Sbjct: 96  LTAHSGTHVDAPGHVFDHYYHAGFDVDTLDLAILNANVMESLHIPKGVRRVLFRTLNTDR 155

Query: 285 KLIWPR 302
           KL+W +
Sbjct: 156 KLMWKK 161


>02_05_0793 -
           31782203-31782355,31782958-31783096,31783407-31783710,
           31783820-31783983,31784105-31784327,31784697-31784937,
           31786053-31786182,31786272-31786900
          Length = 660

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 210 SSALTSSKIRKKPRSYQWRPISGDT-KLIWPRIDGMDFTSMWFQHDRATCHTKREA 374
           SS  T   +R K    +WR I      L W  +   D T +W + ++  C++ R++
Sbjct: 355 SSLNTHRALRDKENQKKWRTIRDFADSLCWEMLSQQDETIVWKKTNKLDCYSSRKS 410


>12_01_0032 -
           266954-267079,267204-267245,267290-267366,267450-267540,
           267864-267924,268021-268079,268176-268266,268481-268698,
           268818-268824,269013-269148,270064-270307
          Length = 383

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 198 CPPESSALTSSKIRKKP 248
           C P+SSA+T SK +KKP
Sbjct: 139 CAPDSSAVTLSKTKKKP 155


>02_01_0312 -
           2082614-2082677,2082815-2082945,2083041-2083129,
           2083223-2083292,2083429-2083509,2083768-2083821,
           2084864-2085067,2086272-2086366,2086976-2086997,
           2087492-2087585,2087677-2087764,2087874-2087979,
           2088103-2088189,2088261-2088309,2088418-2088521,
           2088605-2088697,2088900-2088974,2089316-2089384,
           2090182-2090250,2090339-2090374,2090471-2090565,
           2090836-2090911,2091067-2091153,2091287-2091355,
           2091654-2091731,2091836-2091925,2092436-2092642,
           2092736-2092879
          Length = 841

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = -3

Query: 482 ESRAVLNHTISRAFEFLISDVVIKNYK 402
           E  AVL+H++S +F+FL++ +V  +Y+
Sbjct: 28  ELPAVLSHSLSSSFDFLLAPLVDPDYR 54


>01_06_0091 -
           26363070-26363361,26363467-26363625,26363708-26363880,
           26366639-26366810,26366912-26367294
          Length = 392

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 255 YQWRPISGDTKLIWPRIDGMDFTSMW 332
           Y+WRP S +     PR +G+DF S W
Sbjct: 117 YRWRPSSCEL----PRFNGLDFLSKW 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,153
Number of Sequences: 37544
Number of extensions: 331638
Number of successful extensions: 695
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)