Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0885
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)            29   4.5  
SB_32997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
          Length = 647

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 503 EISRSPIESRAVLNHTISRAFEF 435
           EI  S +   AV+NHT  RAF+F
Sbjct: 225 EIELSELNKTAVINHTTPRAFQF 247


>SB_32997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 175 FTMKR*TLVRRNHRPLLLRRYARSRAHIN 261
           +TMK   ++   ++P+ LR+  R+RAH N
Sbjct: 216 YTMKELQVLHAPYKPISLRQIKRARAHAN 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,942,288
Number of Sequences: 59808
Number of extensions: 383933
Number of successful extensions: 663
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)