Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0885
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23486-5|AAL38958.2|  326|Caenorhabditis elegans Serpentine rece...    27   9.2  
AF106582-7|ABD94096.1|  806|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF106582-6|ABD94095.1|  834|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U23486-5|AAL38958.2|  326|Caenorhabditis elegans Serpentine
           receptor, class x protein114 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/81 (22%), Positives = 38/81 (46%)
 Frame = +3

Query: 99  GTLTAHSGHIG*AVKFRTNTYLVVIFHHETLDACPPESSALTSSKIRKKPRSYQWRPISG 278
           G L+A   +   ++ F +NT+ +++F     DA   + S++T    +++ R   ++ +  
Sbjct: 170 GRLSAFFTYFAFSMSFISNTFNIIVFFKLVADAKTAKISSMTHITRQRRNRKMLFQSVCQ 229

Query: 279 DTKLIWPRIDGMDFTSMWFQH 341
           D  +    ID  + T  W  H
Sbjct: 230 DLII---AIDTFNSTYSWNFH 247


>AF106582-7|ABD94096.1|  806|Caenorhabditis elegans Hypothetical
           protein W05F2.4b protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 204 PESSALTSSKIRKKPRSYQWRPISGDTKLIWPRIDGMDFTSMWFQHD 344
           P    +   K+ +   + Q  P   +T ++  + D MDFT  W Q D
Sbjct: 145 PVEVVIPVRKLSQGATNNQAEPTVAETIVLAKKTDKMDFTRRWLQDD 191


>AF106582-6|ABD94095.1|  834|Caenorhabditis elegans Hypothetical
           protein W05F2.4a protein.
          Length = 834

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 204 PESSALTSSKIRKKPRSYQWRPISGDTKLIWPRIDGMDFTSMWFQHD 344
           P    +   K+ +   + Q  P   +T ++  + D MDFT  W Q D
Sbjct: 173 PVEVVIPVRKLSQGATNNQAEPTVAETIVLAKKTDKMDFTRRWLQDD 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,580,111
Number of Sequences: 27780
Number of extensions: 280953
Number of successful extensions: 509
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)