Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0885
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12080.1 68416.m01504 GTP-binding family protein contains Pfa...    30   1.2  
At3g18330.1 68416.m02332 F-box family protein contains Pfam PF00...    29   3.7  
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi...    28   4.9  
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    27   8.6  

>At3g12080.1 68416.m01504 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 663

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +3

Query: 162 LVVIFHHETLDACPPESSALTSSKIRKKPRSYQWRPISGDTKLIWPRIDGMDFTSMWFQH 341
           LVV+   +T+     E++A     +R+K RS +W PI   T +    +D +   +   Q 
Sbjct: 487 LVVVNKWDTIPNKNQETAAHYEDDVREKLRSLKWAPIVYSTAITGHSVDNIVVAAATVQK 546

Query: 342 DRA 350
           +R+
Sbjct: 547 ERS 549


>At3g18330.1 68416.m02332 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 376

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +3

Query: 174 FHHETLDACPPESSALTSSKIRKKPRSYQWRPISGDTKLIWPRIDGMDFTSMWFQHDR 347
           FH + +  C  +   L +SK+ +  R   W P++G+TK I    +G +F   + Q D+
Sbjct: 100 FHIDRVFHC--DGLLLCTSKLER--RMVVWNPLTGETKWIQTHEEGDNFFLGYSQEDK 153


>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 691

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 442 KAREIV*FNTALLSMGLREISSHVDKPQSIAALKANTTRALREIE-SHYCEDVIPKLVH 615
           +AR+I  + TA+       I++  D    + A KA     L++IE S +C   IP+L H
Sbjct: 338 EARKIGDWKTAIKETDAA-IANGADSSPQLVACKAEAFLRLKQIEDSDFCVSCIPRLDH 395


>At2g48050.1 68415.m06014 expressed protein ; expression supported
           by MPSS
          Length = 1500

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 207 ESSALTSSKIRKKPRSYQWRPISGDTKLIWPRID 308
           ESS     K ++K  S+ WR +S +TK +W  +D
Sbjct: 560 ESSTYHQMKSQRK-NSFVWRDLSFETKSMWTVLD 592


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,786,634
Number of Sequences: 28952
Number of extensions: 264802
Number of successful extensions: 473
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)