Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0884
         (689 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3J409 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  

>UniRef50_A3J409 Cluster: Putative uncharacterized protein; n=1;
           Flavobacteria bacterium BAL38|Rep: Putative
           uncharacterized protein - Flavobacteria bacterium BAL38
          Length = 390

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = +2

Query: 362 SMKISRNIIYNLIQLVFYISILNVWNVSSLNENIKLKNFIP*NYN*IVITFQN*NKIVHK 541
           S +I  N I N + L  Y  + NV+NVS  N+NI+  N +  +YN + I   N + I+++
Sbjct: 241 SERIQENEIINDLILEQYTYMKNVFNVSRYNKNIEKFNEVIEDYN-VAIVLLN-DFIIYR 298

Query: 542 FKG 550
            KG
Sbjct: 299 NKG 301


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,943,530
Number of Sequences: 1657284
Number of extensions: 10363611
Number of successful extensions: 16183
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 15777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16182
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)