Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0884
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760...    30   2.0  

>02_05_0373 +
           28374298-28374380,28375126-28375303,28375975-28376065,
           28376162-28376256,28376379-28376468,28376789-28376837,
           28376941-28377079,28377224-28377340,28377437-28377527,
           28377604-28377746,28378009-28378123,28378439-28378483,
           28378565-28378645
          Length = 438

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 616 IYTNVSTIHILLSISRQHRN*CAFKFVHDFILILECY 506
           +Y  +S ++I++ +S      CAFKFV + + + + Y
Sbjct: 59  LYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSY 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,328,814
Number of Sequences: 37544
Number of extensions: 244252
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)