Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0884
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34900| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-12)                 29   3.6  
SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_34900| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-12)
          Length = 433

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 386 IYNLIQLVFYISILNVWNVSSLN 454
           + N + L FY++IL +WN S++N
Sbjct: 381 VTNTLFLTFYVTILVMWNTSTMN 403


>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 452  LVMTHSTHLV*KYKTPTESDYKLCF*RFSLTINAASSSANRLQVRFYKNLKC 297
            L++ HS HLV +   P ES++ L        I   +++   L V  Y + KC
Sbjct: 959  LIVLHSPHLVPQLVQPNESEFALSLLSLGNGIGGLAAAIVGLFVEPYLSAKC 1010


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,798,358
Number of Sequences: 59808
Number of extensions: 322745
Number of successful extensions: 582
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)