Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0883
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50806| Best HMM Match : EGF_CA (HMM E-Value=1e-27)                  35   0.072
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     29   2.7  
SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_50806| Best HMM Match : EGF_CA (HMM E-Value=1e-27)
          Length = 286

 Score = 34.7 bits (76), Expect = 0.072
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = -2

Query: 254 G*TGGNRCIYVKLSIAVSRNLSIREFLLRPVSPECSNKKNQTHNIIICVITDGRTSC 84
           G  G N+ +YV   IA  R      +LLRP   EC++K+++  N  +C  T G   C
Sbjct: 117 GVDGNNQSLYVPAVIA--REEKNGNYLLRPDIDECADKQSRCPNNAVCKNTAGSYDC 171


>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 143  YYCTRATQGAIEIPGYS--GYATRQSTT*HKCTYYRQFNQDQI 265
            YY   AT GA+E PGYS  G A R ST   +  +  Q    Q+
Sbjct: 1047 YYENCATNGALEHPGYSTEGAAHRHSTLGFERQHVNQTGNPQV 1089


>SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 629 IYYGYSNESP*L*TCLVLGFFFRTIISL*K*RASIESHERY 507
           +YYG S  SP L   + L FF  +I+ +    A+I S +R+
Sbjct: 314 VYYGVSLSSPSLGGSMYLNFFLTSIVEIPANFAAIYSMKRF 354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,311,505
Number of Sequences: 59808
Number of extensions: 354453
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)