Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0883
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00035-8|ABL01530.1|   96|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF016447-10|AAG24008.1|  314|Caenorhabditis elegans Hypothetical...    28   7.3  

>U00035-8|ABL01530.1|   96|Caenorhabditis elegans Hypothetical
           protein R01H2.8 protein.
          Length = 96

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 301 ASDCTTAYFLLINLILVKLAVIGAFMLSCRLP 206
           A +  T  FL++   +  LAVIGA ++ C  P
Sbjct: 22  AENLVTLIFLIVIFTIFALAVIGAILIGCLKP 53


>AF016447-10|AAG24008.1|  314|Caenorhabditis elegans Hypothetical
           protein C54F6.3 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 406 FVNVVFDLFLRANYPLMHSKITK 474
           FVN+V D F+ +NY LM   I K
Sbjct: 52  FVNIVSDFFVASNYKLMSCGIRK 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,740,203
Number of Sequences: 27780
Number of extensions: 284656
Number of successful extensions: 395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)