Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0882
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    27   1.9  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    27   1.9  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = -1

Query: 623 IKNNKTRISVKKIFIAVRNVSKYEHYE*FITSRLQKLSKMDTISFDLILNLVTP 462
           I N+K R+S ++I   V    KY+  +   TSR+Q  + +++ ++ L  +L  P
Sbjct: 501 ITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDP 554


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 638 FNFSGIKNNKTRISVKKIFIAVRNVSKYEHY 546
           F FSG+K   +   + K+   +RN+SK   Y
Sbjct: 216 FGFSGVKYKGSDFPIDKLMFLIRNMSKANIY 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,387
Number of Sequences: 5004
Number of extensions: 54614
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)