Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0882
(695 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25595| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_462| Best HMM Match : RVT_1 (HMM E-Value=7.7e-25) 48 7e-06
SB_26635| Best HMM Match : DUF635 (HMM E-Value=0.018) 48 1e-05
SB_46987| Best HMM Match : Sigma70_r4 (HMM E-Value=1.4) 46 4e-05
SB_6884| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_11420| Best HMM Match : MBOAT (HMM E-Value=6.9e-06) 39 0.004
SB_26678| Best HMM Match : I-set (HMM E-Value=1e-07) 31 0.67
SB_37754| Best HMM Match : HTH_5 (HMM E-Value=9.4) 29 3.6
SB_22247| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_12631| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_24522| Best HMM Match : DS (HMM E-Value=0) 29 4.8
>SB_25595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = -3
Query: 390 SISPKERLVVTLRFLATGNSYQNLKFSSSISHPLMTKTIPETCRAIINVWH 238
+IS +ERLVVTLR+LATG+S Q+ F+ I +++ I ETC AI H
Sbjct: 4 AISSEERLVVTLRYLATGDSQQSQSFNFRIGRSTVSEIIRETCSAIWEALH 54
>SB_462| Best HMM Match : RVT_1 (HMM E-Value=7.7e-25)
Length = 863
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = -3
Query: 390 SISPKERLVVTLRFLATGNSYQNLKFSSSISHPLMTKTIPETCRAIINV 244
SI+P ERL +T+R+LATG ++Q+L F I ++K + E C I +V
Sbjct: 65 SIAPNERLALTIRYLATGETFQSLSFQFRIGKSTVSKIVLEVCDVIYHV 113
>SB_26635| Best HMM Match : DUF635 (HMM E-Value=0.018)
Length = 345
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = -3
Query: 390 SISPKERLVVTLRFLATGNSYQNLKFSSSISHPLMTKTIPETCRAIINVWH 238
++S +ERLV TLR+LATG+S Q+ F+ I +++ I ETC AI H
Sbjct: 4 ALSSEERLVATLRYLATGDSQQSQSFNFRIGRSTVSEIIRETCSAIWEALH 54
>SB_46987| Best HMM Match : Sigma70_r4 (HMM E-Value=1.4)
Length = 252
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = -3
Query: 390 SISPKERLVVTLRFLATGNSYQNLKFSSSISHPLMTKTIPETCRAIINV 244
SI+P ERL +T+R+LATG ++Q+L I ++K + E C I +V
Sbjct: 65 SIAPNERLALTIRYLATGETFQSLSLQFRIGKSTVSKIVLEVCDVIYHV 113
>SB_6884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = -3
Query: 390 SISPKERLVVTLRFLATGNSYQNLKFSSSISHPLMTKTI 274
SI P+ER+ VTLR+LATG S+++L+F IS ++ I
Sbjct: 248 SIKPRERMAVTLRYLATGESFKSLQFQIRISRTAISAII 286
>SB_11420| Best HMM Match : MBOAT (HMM E-Value=6.9e-06)
Length = 628
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = -3
Query: 378 KERLVVTLRFLATGNSYQNLKFSSSISHPLMTKTIPETCRAIINVWH 238
+ERLVVT R+LATG S Q+ F+ I ++ + ETC AI H
Sbjct: 97 EERLVVT-RYLATGGSQQSQSFNFRIGKSTVSMIVRETCAAIWEALH 142
>SB_26678| Best HMM Match : I-set (HMM E-Value=1e-07)
Length = 563
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 280 NYP*NMSGYYKCLAHEIKATEINTFYSEAKKQTK 179
N P NMSG ++C+A ++ TFY + KK ++
Sbjct: 220 NIPLNMSGSWRCVASNHLGSQNKTFYVDVKKPSE 253
>SB_37754| Best HMM Match : HTH_5 (HMM E-Value=9.4)
Length = 450
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 351 FLATGNSYQNLKFSSSISHPLMTKTIPETCRAI 253
+LATG ++Q+L F I ++K + E C I
Sbjct: 56 YLATGETFQSLSFQFRIGKSTVSKIVLEVCDVI 88
>SB_22247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -1
Query: 509 KMDTISFDLILNLVTPFIQKQD 444
+M +SFDL+L +TP+I++Q+
Sbjct: 88 RMKRVSFDLLLATITPYIRRQN 109
>SB_12631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -1
Query: 509 KMDTISFDLILNLVTPFIQKQD 444
+M +SFDL+L +TP+I++Q+
Sbjct: 88 RMKRVSFDLLLATITPYIRRQN 109
>SB_24522| Best HMM Match : DS (HMM E-Value=0)
Length = 340
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 6 RAVSSGCLLSASTGIIICSPGLSSHHCLIRNAFR 107
R V++ + S +TGIII GL HH N R
Sbjct: 264 RLVNNHAVFSKNTGIIILGGGLVKHHVCNANMMR 297
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,087,539
Number of Sequences: 59808
Number of extensions: 371374
Number of successful extensions: 753
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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