Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0882
         (695 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U60666-1|AAB02976.1|  463|Homo sapiens testis specific leucine r...    36   0.14 
BC047286-1|AAH47286.1|  466|Homo sapiens leucine rich repeat con...    36   0.14 
BC027589-1|AAH27589.1|  411|Homo sapiens LRRC6 protein protein.        36   0.14 

>U60666-1|AAB02976.1|  463|Homo sapiens testis specific leucine rich
           repeat protein protein.
          Length = 463

 Score = 35.9 bits (79), Expect = 0.14
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = -1

Query: 695 DNNKFCGSVTSFNLVFVFRFNFSGIKNNKTRISVKKIFIAVRNVSKYEHYE*FITSRLQK 516
           +N + C  +   +L   F    S IKN +  I +K++F+     + ++HY  F+ + L +
Sbjct: 82  ENLEGCEELAKLDLTVNFIGELSSIKNLQHNIHLKELFLMGNPCASFDHYREFVVATLPQ 141

Query: 515 LSKMD 501
           L  +D
Sbjct: 142 LKWLD 146


>BC047286-1|AAH47286.1|  466|Homo sapiens leucine rich repeat
           containing 6 protein.
          Length = 466

 Score = 35.9 bits (79), Expect = 0.14
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = -1

Query: 695 DNNKFCGSVTSFNLVFVFRFNFSGIKNNKTRISVKKIFIAVRNVSKYEHYE*FITSRLQK 516
           +N + C  +   +L   F    S IKN +  I +K++F+     + ++HY  F+ + L +
Sbjct: 82  ENLEGCEELAKLDLTVNFIGELSSIKNLQHNIHLKELFLMGNPCASFDHYREFVVATLPQ 141

Query: 515 LSKMD 501
           L  +D
Sbjct: 142 LKWLD 146


>BC027589-1|AAH27589.1|  411|Homo sapiens LRRC6 protein protein.
          Length = 411

 Score = 35.9 bits (79), Expect = 0.14
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = -1

Query: 695 DNNKFCGSVTSFNLVFVFRFNFSGIKNNKTRISVKKIFIAVRNVSKYEHYE*FITSRLQK 516
           +N + C  +   +L   F    S IKN +  I +K++F+     + ++HY  F+ + L +
Sbjct: 82  ENLEGCEELAKLDLTVNFIGELSSIKNLQHNIHLKELFLMGNPCASFDHYREFVVATLPQ 141

Query: 515 LSKMD 501
           L  +D
Sbjct: 142 LKWLD 146


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,056,501
Number of Sequences: 237096
Number of extensions: 1665211
Number of successful extensions: 2171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2171
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)