Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0882
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z82286-8|CAB05308.2|  487|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical
           protein C18H7.6 protein.
          Length = 590

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 179 FSLFFCFRIKSINFGRLYFMCQTFIIARHVSGIV 280
           F LF+C  +  + FG  +F    F++  H   +V
Sbjct: 383 FQLFYCALMTGLTFGYTFFKFHDFLMVVHKDNVV 416


>Z82286-8|CAB05308.2|  487|Caenorhabditis elegans Hypothetical
           protein W02A2.5 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 650 FVFRFNFSGIKNNKTRISVKKIFIAVRNVSKY 555
           FVF  NFSGI    T+I + + FI  R  +KY
Sbjct: 341 FVFTKNFSGIAEFNTQIIMNQAFIQ-RTFNKY 371


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,772
Number of Sequences: 27780
Number of extensions: 294646
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)