Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0881
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P94570 Cluster: Putative uncharacterized protein ysoC; ...    34   3.8  
UniRef50_A0YAR2 Cluster: Putative esterase; n=1; marine gamma pr...    33   6.6  

>UniRef50_P94570 Cluster: Putative uncharacterized protein ysoC;
           n=1; Bacillus subtilis|Rep: Putative uncharacterized
           protein ysoC - Bacillus subtilis
          Length = 204

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 26/87 (29%), Positives = 38/87 (43%)
 Frame = +3

Query: 33  SIVIVITKRHFVNDVKNMPESSVASLARRATSGKRRAAATKPSELMTPREKPR*VIFERK 212
           SI +    R F   VK    +S +S +R A +G+R       S +   R K     FER+
Sbjct: 104 SIFLNCLTRAFFGFVKIATNASSSSFSRLAITGRRPIN----SGINPKRSKSSGSTFERR 159

Query: 213 RRTWSGAVVLHAPRPVLFVLTRSIVEC 293
                 A +L AP P+ F   R ++ C
Sbjct: 160 SSFSRSAALLSAPNPITFCAKRRLMIC 186


>UniRef50_A0YAR2 Cluster: Putative esterase; n=1; marine gamma
           proteobacterium HTCC2143|Rep: Putative esterase - marine
           gamma proteobacterium HTCC2143
          Length = 571

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 504 SSGAQTRGIVNTGPSKRAVLHRIYHRSGNATY*EDPARNSVG 629
           S+GA + G V   P  R ++H+   +SG  T+   P +NSVG
Sbjct: 243 SAGAHSVGQVMASPLSRGLIHKAIAQSGIGTHQYTPLQNSVG 284


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,816,756
Number of Sequences: 1657284
Number of extensions: 11921407
Number of successful extensions: 25629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25623
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)