Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0881
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0012 - 5575574-5575849,5575889-5575954,5576103-5576926,557...    29   4.6  
06_01_0749 + 5599238-5600128                                           28   6.1  
02_02_0705 - 13124955-13125212,13125309-13125389,13125539-13125862     28   8.1  

>05_02_0012 -
           5575574-5575849,5575889-5575954,5576103-5576926,
           5577333-5577405,5577936-5577983
          Length = 428

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 343 KTMICGTCYRRSASREPHSTIDLVSTNKTGRGACKTTAPLHVRLFLSK-ITHLGFSRGVI 167
           K+     C+R++ SR PH ++ L S N   +    T  PL +R  L K +      R  I
Sbjct: 78  KSSSLSLCHRQTLSRPPHHSV-LFSPNGVKQRNQMTLLPLDLRAHLVKFVFFCAIRRAAI 136

Query: 166 NSDG 155
            + G
Sbjct: 137 RAQG 140


>06_01_0749 + 5599238-5600128
          Length = 296

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 102 ASLARRATSGKRRAAATKPSELMTPR---EKPR*VIFERKRRTWSGAVVLH 245
           +S +RRA +G RR AA  P+  ++PR     P     ER+RR  S A+ +H
Sbjct: 35  SSSSRRAAAGDRRPAARAPNPSLSPRGGGGAPS-RKSERRRRPRSLAMAVH 84


>02_02_0705 - 13124955-13125212,13125309-13125389,13125539-13125862
          Length = 220

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 403 FIAGSMLLKFLFRCFLPMPIVL 468
           F++ S+ ++  F CF P+PIV+
Sbjct: 100 FLSNSLAIENYFSCFFPLPIVI 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,106,377
Number of Sequences: 37544
Number of extensions: 331685
Number of successful extensions: 837
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)