Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0881
         (693 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003126-1|AAH03126.1|  808|Homo sapiens protocadherin alpha 2 p...    30   9.0  
AF152480-1|AAD43741.1|  824|Homo sapiens protocadherin alpha 2 s...    30   9.0  
AF152310-1|AAD43704.1|  948|Homo sapiens protocadherin alpha 2 p...    30   9.0  
AC005609-12|AAC34324.1|  824|Homo sapiens KIAA0345-like 12 protein.    30   9.0  

>BC003126-1|AAH03126.1|  808|Homo sapiens protocadherin alpha 2
           protein.
          Length = 808

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -1

Query: 324 LVTGAQRVANRTQLLTSLVQTKRVAARVKQPRHSTFAF----SSRK*LISAFHEVSLIQT 157
           L TG+ R+  R  L T  + T R       PRH                +A   VSL+++
Sbjct: 613 LGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVES 672

Query: 156 ALWRPRAACRLWLGA 112
               P+A+ R W+GA
Sbjct: 673 G-QAPKASSRAWVGA 686


>AF152480-1|AAD43741.1|  824|Homo sapiens protocadherin alpha 2
           short form protein protein.
          Length = 824

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -1

Query: 324 LVTGAQRVANRTQLLTSLVQTKRVAARVKQPRHSTFAF----SSRK*LISAFHEVSLIQT 157
           L TG+ R+  R  L T  + T R       PRH                +A   VSL+++
Sbjct: 613 LGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVES 672

Query: 156 ALWRPRAACRLWLGA 112
               P+A+ R W+GA
Sbjct: 673 G-QAPKASSRAWVGA 686


>AF152310-1|AAD43704.1|  948|Homo sapiens protocadherin alpha 2
           protein.
          Length = 948

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -1

Query: 324 LVTGAQRVANRTQLLTSLVQTKRVAARVKQPRHSTFAF----SSRK*LISAFHEVSLIQT 157
           L TG+ R+  R  L T  + T R       PRH                +A   VSL+++
Sbjct: 613 LGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVES 672

Query: 156 ALWRPRAACRLWLGA 112
               P+A+ R W+GA
Sbjct: 673 G-QAPKASSRAWVGA 686


>AC005609-12|AAC34324.1|  824|Homo sapiens KIAA0345-like 12 protein.
          Length = 824

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -1

Query: 324 LVTGAQRVANRTQLLTSLVQTKRVAARVKQPRHSTFAF----SSRK*LISAFHEVSLIQT 157
           L TG+ R+  R  L T  + T R       PRH                +A   VSL+++
Sbjct: 613 LGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVES 672

Query: 156 ALWRPRAACRLWLGA 112
               P+A+ R W+GA
Sbjct: 673 G-QAPKASSRAWVGA 686


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,012,954
Number of Sequences: 237096
Number of extensions: 1774421
Number of successful extensions: 2798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2798
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)