Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0881
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23516-3|AAG38881.1|  218|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U23516-3|AAG38881.1|  218|Caenorhabditis elegans Hypothetical
           protein B0416.4 protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 128 RQAARGRHKAV*INDTS*KAEMSYFREEKANVEWRGCF 241
           +Q  R R K   + D   K    Y ++E    EWR CF
Sbjct: 121 KQMVRDRMK---VKDVDEKLLQQYMKKENVEFEWRSCF 155


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 75  VKNMPESSVASLARRATSGKRRAAATKPSELMTPREKPR 191
           V+ +P  SVA++ R      R A+   PS  + P+ +PR
Sbjct: 605 VQPVPPMSVATVTRGPPPPTRPASVIAPSSSVVPKSQPR 643


>AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical
           protein Y57A10B.1 protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 39  VIVITKRHFVNDVKNMPESSVASLARRATSGKRRAAATKPSELMTPREKPR*VIFERKR 215
           VI +TK H +N  ++   S   S   R  SG++      PS +   +E+     FE+K+
Sbjct: 55  VIGLTKSHSLNSFEDSTASVFVSTTTRCHSGRKVHQLKNPSRVTVTQEEEN-RNFEKKK 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,314,630
Number of Sequences: 27780
Number of extensions: 271952
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)