Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0881
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36740.1 68418.m04402 PHD finger family protein                     30   1.7  
At5g36670.1 68418.m04388 PHD finger family protein                     30   1.7  
At1g15050.1 68414.m01799 auxin-responsive AUX/IAA family protein...    29   2.9  

>At5g36740.1 68418.m04402 PHD finger family protein
          Length = 1179

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 620 VSRRIFSVGRISAPVVDSVKHCSLARASVNNTSGLSS 510
           ++RR+   G ++  +V+S KHC   +   N  SG SS
Sbjct: 59  ITRRVLRSGSVARDLVNSDKHCKAVKRKGNVVSGGSS 95


>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 620 VSRRIFSVGRISAPVVDSVKHCSLARASVNNTSGLSS 510
           ++RR+   G ++  +V+S KHC   +   N  SG SS
Sbjct: 59  ITRRVLRSGSVARDLVNSDKHCKAVKRKGNVVSGGSS 95


>At1g15050.1 68414.m01799 auxin-responsive AUX/IAA family protein
           similar to auxin-responsive protein IAA12 (Indoleacetic
           acid-induced protein 12)[Arabidopsis thaliana]; contains
           Pfam profile: PF02309: AUX/IAA family
          Length = 185

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 525 GIVNTGPSKRAVLHRIYHRSGNATY*EDPARNSVGFI 635
           G+++ G S R + H IYH SG      +  R   G++
Sbjct: 59  GVIDLGLSLRTIQHEIYHSSGQRYCSNEGYRRKWGYV 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,498,020
Number of Sequences: 28952
Number of extensions: 253725
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)