Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0879
         (610 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6DL66 Cluster: Putative uncharacterized protein; n=1; ...    34   2.3  
UniRef50_A5BJZ0 Cluster: Putative uncharacterized protein; n=1; ...    33   4.0  
UniRef50_Q7M899 Cluster: MULTIDRUG-EFFLUX TRANSPORTER; n=2; Heli...    32   9.3  
UniRef50_A4VEL1 Cluster: ATP-binding cassette transporter; n=2; ...    32   9.3  

>UniRef50_A6DL66 Cluster: Putative uncharacterized protein; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Putative
           uncharacterized protein - Lentisphaera araneosa HTCC2155
          Length = 296

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = +1

Query: 322 PDISRCLMVPMI*YLWFNEASANGNXN*ISPFYLQKFKERKTLGLRHTGLPNLNPVPKVY 501
           P IS C MV +I +   N+ S  G  N  +P  +      KTL  RH G P++ PVP + 
Sbjct: 195 PWISLCDMVQLIVHC-LNDDSLRGPINACAPEIISNATFTKTLA-RHLGRPSIFPVPTLV 252

Query: 502 WK 507
           +K
Sbjct: 253 FK 254


>UniRef50_A5BJZ0 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 214

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 188 ATKLY*DFLLEVLILCVMKFDFIQRLWCQQPPTPTPV 298
           A  L  DF  ++L L V+ +D ++  +  QPPTPTP+
Sbjct: 23  ALSLISDFCSDILSLAVLYYDSLEPGFRDQPPTPTPL 59


>UniRef50_Q7M899 Cluster: MULTIDRUG-EFFLUX TRANSPORTER; n=2;
           Helicobacteraceae|Rep: MULTIDRUG-EFFLUX TRANSPORTER -
           Wolinella succinogenes
          Length = 437

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 486 SSEGILESFFWGIHGGHFYSYLNCGVFFVMLVWYFVEVNW 605
           +S G L SFF G+ GGHFY +   G+F +      V + W
Sbjct: 332 TSFGYLGSFFGGLLGGHFYQWF--GIFSIACFVGSVSIIW 369


>UniRef50_A4VEL1 Cluster: ATP-binding cassette transporter; n=2;
           Tetrahymena thermophila SB210|Rep: ATP-binding cassette
           transporter - Tetrahymena thermophila SB210
          Length = 1106

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 432 QRKENIGPETHGTAKFKPSSEGILESFFWGIHGGHFY 542
           Q  ENI   ++ T+ + P+S+ +L++  W I  G+FY
Sbjct: 533 QNGENIAEFSNFTSLWDPNSDAVLKNITWNIKKGNFY 569


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,081,245
Number of Sequences: 1657284
Number of extensions: 13997464
Number of successful extensions: 28677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28676
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)