Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0879
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    26   5.0  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   6.5  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.7  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   8.7  

>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 309 WTKQTGVGVGGC 274
           WTK TG G GGC
Sbjct: 322 WTKLTGAGGGGC 333


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 515 EKAFQYTFGTGFKFGSPVCLRPNVFLSLNFC 423
           E     +F  G +  SP+  R   +LSL FC
Sbjct: 80  ESVHDSSFNLGTRPNSPLGFRQTAYLSLGFC 110


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 606 PNSLQQNTTLTSQRRRHSLNNYKN 535
           PNS Q+N T T     H+ +N+ N
Sbjct: 442 PNSQQRNNTSTDSANGHNPSNHAN 465


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 504 ESFFWGIHGGHFYSYLNCGVFFVMLVWYFVEV 599
           E FF+G H G  Y Y   G+    ++ +   V
Sbjct: 52  EHFFFGSHNGAIYIYQKNGILLRKMILHSASV 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,929
Number of Sequences: 5004
Number of extensions: 61560
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)