Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0879
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF078157-14|AAG24081.1|  348|Caenorhabditis elegans Serpentine r...    28   6.0  

>AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical
           protein Y61B8A.2 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 245 ISSHKGLRLPAGSLNIVLLPFH*LQFYYI 159
           ++S KG+  P+ ++ ++ LPF  L FY I
Sbjct: 23  LASWKGVAYPSHAIQVISLPFQILAFYVI 51


>AF078157-14|AAG24081.1|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein92 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 260 SE*SQISSHKGLRLPAGSLNIVLLPFH*LQFYYI 159
           S+ S +SS KGL +   S+ +V +P H L FY I
Sbjct: 18  SDDSFLSSWKGLVVVCFSIQLVSIPCHFLTFYLI 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,012,057
Number of Sequences: 27780
Number of extensions: 338712
Number of successful extensions: 756
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)