Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0879
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 108 NLKTHLKWVYRHKLYHC 158
           +LKTH++     K YHC
Sbjct: 24  HLKTHMRLHTGEKPYHC 40


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/39 (20%), Positives = 16/39 (41%)
 Frame = -2

Query: 435 FELLQIKWRYLIXVSVCTCFIKPKILYHRDHETTRYIWI 319
           + +L + W + I    C      K+ +H       Y+W+
Sbjct: 76  YRILDVDWLHNIWRPDCFFKNAKKVTFHEMSIPNHYLWL 114


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = -1

Query: 487 LGLNLAVPCVSGPMFSFL*TSADKMEISNYXFRLHLLH*TKDIIS 353
           +GL +   C+ G   +    +A +ME ++   ++H+   TK+++S
Sbjct: 531 VGLKMPRYCLFGDSVN----TASRMEATSQAMQIHISQSTKELLS 571


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -2

Query: 525 VCPRKSFPIYLRNW 484
           +CP + FP+ +  W
Sbjct: 233 LCPAQGFPVPVHRW 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,246
Number of Sequences: 438
Number of extensions: 4573
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)