Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0879
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica...    31   0.79 
At1g30825.1 68414.m03769 actin-related protein 2/3 complex 34kDa...    28   4.2  
At4g27290.1 68417.m03916 S-locus protein kinase, putative simila...    27   9.7  
At1g69430.1 68414.m07978 hypothetical protein                          27   9.7  

>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|P41410
           DNA repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1256

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = -2

Query: 435 FELLQIKWRYLIXVSVCTCFIKPKI----LYHRDHETTRYIWI 319
           F+ L+I+ R    +  CT F++P I    LY RD ET   +W+
Sbjct: 56  FQRLRIRSRKATLID-CTSFLRPGIDVCVLYQRDEETPEPVWV 97


>At1g30825.1 68414.m03769 actin-related protein 2/3 complex 34kDa
           subunit family / arp2/3 complex 34kDa subunit family
           contains Pfam PF04045: Arp2/3 complex, 34kD subunit
           p34-Arc; similar to ARP2/3 complex 34 kDa subunit
           (P34-ARC) (Swiss-Prot:O96623) [Dictyostelium
           discoideum]; similar to ARP2/3 complex 34 kDa subunit
           (P34-ARC) (Actin-related protein 2/3 complex subunit 2)
           (Swiss-Prot:O15144) [Homo sapiens]
          Length = 318

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = -1

Query: 610 WPQFTSTKYHTNITKKTPQFK*L*KCPPCMPQKKLSNIPSELGLNLAVPCVSGPMFSFL 434
           W +F   +YH  +T K P    L    P  P + +S     LG   A+    G  F  L
Sbjct: 32  WIEFDDVRYHVQVTMKNPNLLLLSVSLPNPPPEAMSFDGLPLGAIEAIKTTYGTGFQIL 90


>At4g27290.1 68417.m03916 S-locus protein kinase, putative similar
           to S-receptor kinase gi|392557|gb|AAA62232; contains
           Pfam domains PF00954: S-locus glycoprotein family,
           PF00069: Protein kinase domain and PF01453: Lectin
           (probable mannose binding)
          Length = 772

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +1

Query: 400 N*ISPFYLQK-----FKERKTLGLRHTGLPNLNPVP 492
           N +  F+L+K     F+     GLR TG+PNL P P
Sbjct: 186 NGVPQFFLKKNSVVVFRTGPWNGLRFTGMPNLKPNP 221


>At1g69430.1 68414.m07978 hypothetical protein
          Length = 350

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -2

Query: 471 QSRVSQAQCFPFFELLQIKWRYLIXVSVCTCFIKPKILYHRDHETTRYIW 322
           ++ VS A CFP F  L +  R  +  SV   + + K++  +     + +W
Sbjct: 118 ETAVSSAMCFPLFITLSLLSRAAVVYSVDCTYSRKKVVVTKFVVIMQRLW 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,979,183
Number of Sequences: 28952
Number of extensions: 307582
Number of successful extensions: 677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)