Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0878
         (694 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    40   0.044
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    36   1.2  
UniRef50_A2EJF1 Cluster: LIM domain containing protein; n=4; Tri...    33   8.8  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 40.3 bits (90), Expect = 0.044
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 182 AGWWYLPVRTHKRSYHQ 232
           A WWYLP RTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +2

Query: 59  RHAYDINAPPTLRYKF 106
           RH YD+NAPPT RYKF
Sbjct: 176 RHLYDVNAPPTSRYKF 191


>UniRef50_A2EJF1 Cluster: LIM domain containing protein; n=4;
           Trichomonas vaginalis G3|Rep: LIM domain containing
           protein - Trichomonas vaginalis G3
          Length = 842

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 336 RLLSNRNMKRIIEPLLSTIITDYYYYYHFADFQFNWW*DLL*VRTGRYHHPAYFCHEAVI 157
           R+ + R  KR  +P+L   + D  +Y+H   F        L  +    HH  Y+C E  I
Sbjct: 579 RIATQRACKRCDQPILGRYVFDRSFYFHVKCFACYECDKQLNGKNFVVHHNRYYCPEQGI 638

Query: 156 RF 151
           R+
Sbjct: 639 RY 640


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 655,429,404
Number of Sequences: 1657284
Number of extensions: 11958826
Number of successful extensions: 23932
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23849
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)