Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0878
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0527 - 15025031-15025993                                         28   6.1  
05_03_0524 + 14994170-14995132                                         28   6.1  
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    28   8.1  

>05_03_0527 - 15025031-15025993
          Length = 320

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 122 ITTAAPPFKPKRITASWQK*AGWW 193
           ++ ++PPFKP R+   W    G W
Sbjct: 129 LSPSSPPFKPSRVIVRWWAPPGGW 152


>05_03_0524 + 14994170-14995132
          Length = 320

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 122 ITTAAPPFKPKRITASWQK*AGWW 193
           ++ ++PPFKP R+   W    G W
Sbjct: 129 LSPSSPPFKPSRVIVRWWAPPGGW 152


>03_05_0725 + 27155736-27155746,27155798-27155949,27156108-27158068,
            27159169-27159397,27159506-27159634,27159725-27159838,
            27160059-27160258,27160301-27160599,27160713-27160923,
            27161017-27161172,27161290-27161447,27161532-27161724,
            27162015-27162406,27162537-27162717,27162802-27163031,
            27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 105  NLYLKVGGAFMSYACLWAPVTT*HQVGCDE 16
            NL  K+ G FM +A LWA ++T  +V   E
Sbjct: 1502 NLLEKMFGVFMDHANLWADISTIPEVNSPE 1531


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,725,982
Number of Sequences: 37544
Number of extensions: 336765
Number of successful extensions: 569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)