Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0877
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.6  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    26   4.7  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.3  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    25   8.3  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 124 GGRAHSPPDIKWLLEPIDIYN 62
           GG  H P  + WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = -1

Query: 291 HEKCKSHETFYE-IN---RKRSFNSLYDLGKPEAI 199
           H    S ++FY+ +N   +KR+FN+ YD   PEAI
Sbjct: 49  HVVILSLDSFYKSLNAEQKKRAFNNDYDFDSPEAI 83


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 148 FLKPYSVVPNLKRYLLYYC 204
           F+   S V  +KRYL+Y+C
Sbjct: 39  FMSSKSFVRGVKRYLIYFC 57


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 355 VVLITIYCLYFFTRISNCYWVFCNISRF 438
           V  +T+  + F   +   +W FC +S F
Sbjct: 119 VCAVTLIVIMFLAPVGRLFWSFCIVSSF 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,749
Number of Sequences: 5004
Number of extensions: 56233
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)