Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0877
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565...    29   3.7  
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147...    28   6.5  

>01_05_0251 +
           19952882-19955459,19956209-19956245,19956370-19956586,
           19957063-19957221,19957397-19957516,19957609-19957719
          Length = 1073

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 564 VGTSTVKKCLVPYRYQNVDFLKLYLIVLPLFKRIFLRFSVSRH*TVP 704
           +G   +  CLV +  +N+  L L++  LP FKRI    S  +   +P
Sbjct: 845 MGDQYLNDCLVTFIERNIFALVLFISPLPTFKRIVRNGSTEQFSAMP 891


>01_03_0107 -
           12613491-12613538,12613906-12614139,12614682-12614713,
           12616021-12616176,12617972-12618159,12618242-12618324,
           12618821-12618976,12620320-12621162,12621197-12621550,
           12621962-12623125
          Length = 1085

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +1

Query: 304 WSDVVMTTSTRLNRSKKVVLITIYCLYFFTRISNCYWVFCNISRFC 441
           ++ VV++          ++L  +  L FF R+ + +W + N++  C
Sbjct: 196 YTRVVLSADPSSGNCTVMILHLLRNLLFFARVGDTHWTWINVNELC 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,864,909
Number of Sequences: 37544
Number of extensions: 315435
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)