Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0877
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.1  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 499 YHNNYY*NSTREKTSYFMIYRTYLCYKIP 413
           Y NNYY N+  +K  Y + Y   +   +P
Sbjct: 313 YSNNYYNNNNYKKLYYNINYIEQIPIPVP 341


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 171 NHRVWFQETFFLL 133
           +HR+W Q+ F LL
Sbjct: 2   HHRMWLQQIFILL 14


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 162 VWFQETFFLLLRWVDELTAHLTLSGYWSP*TSTTKMRHRP 43
           VW  + F  L +W D +   LT     S  T + K+R  P
Sbjct: 194 VWRDKVFITLPKWKDGIPVTLTTVPKHSK-TKSPKLRPYP 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,000
Number of Sequences: 438
Number of extensions: 4185
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)