Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0876
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    29   0.68 
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   6.3  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   6.3  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +3

Query: 144 NGYFTRPHARYP--ICRMRRNGQEAVIDQRFTAISIPCINTEWPASWVTFPSLSSPVISI 317
           NGY  +P    P    R R  G  +  D   TA   P   T  P S    PSLSS   + 
Sbjct: 243 NGYRKKPSPLSPNSSIRNREGGNGSYFDGPLTASPTPSSPTGTPNSMSKSPSLSSLASTG 302

Query: 318 STW*PG 335
           +++ PG
Sbjct: 303 ASYRPG 308


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 599 GQTLFLKTFQYVRRHIWYGYVNPD 528
           G T FL+T++ +  H   GY++ D
Sbjct: 193 GPTFFLRTYKIIDNHAKSGYISND 216


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 386  VWSWRRRFCLESYQ 345
            VW WRR  CL S++
Sbjct: 1016 VWDWRRNRCLNSFK 1029


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,990
Number of Sequences: 5004
Number of extensions: 64024
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)