Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0876
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0330 + 23218018-23218398                                         31   1.2  
11_02_0060 + 7897868-7898296                                           29   2.8  
06_03_0545 + 21983666-21986086                                         29   2.8  

>03_05_0330 + 23218018-23218398
          Length = 126

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 260 GVNAGNTYSGKTLVNDGLLTIASHTADGVTGMGSSEVTI 144
           GV A   +SG T   DGL+   +   DGV G  S + T+
Sbjct: 64  GVIAARGHSGGTAAGDGLMNKVAQLMDGVDGARSGKETV 102


>11_02_0060 + 7897868-7898296
          Length = 142

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 129 ARHSRINEQCRRLHADQCAQRRWLDASAAVILRQDVW 19
           AR  R  E   R   D+  +RRW+D    + L   VW
Sbjct: 28  ARRGRRQEAAARRRPDKAEKRRWVDEQVGLHLAARVW 64


>06_03_0545 + 21983666-21986086
          Length = 806

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 617 PYFCHLAAICGINGALTITPV 679
           P  C++  +CGING    TPV
Sbjct: 275 PQLCNVRGVCGINGICVYTPV 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,189,925
Number of Sequences: 37544
Number of extensions: 468591
Number of successful extensions: 1055
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)