Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0876
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4)                    29   5.1  
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)                 28   8.9  
SB_51707| Best HMM Match : TP2 (HMM E-Value=6.3)                       28   8.9  

>SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1082

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 358 SNHTNNSDPGYQVDMLITGDDKDGKVTHDAGHSVLMQGILIAV 230
           SN   N+ P   ++  +TGD++D  + HD G S      +I V
Sbjct: 710 SNDFENTVPSLSMNQGLTGDNQDSSILHDNGFSKDFDNTVIKV 752


>SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4)
          Length = 391

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 370 GVFVSNHTNNSDPGYQVDMLITGDDKDG 287
           G  V N  ++SD G  V+ L  GDD DG
Sbjct: 166 GTLVFNDNDDSDDGDYVNTLYKGDDDDG 193


>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
          Length = 1450

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 135  RYARHSRINEQCRRLHADQCAQRRWLDASAAVILRQDVWL 16
            R  RH R+ E+  RL       +RWLD +   I  +D+ L
Sbjct: 938  RECRHERLRERAMRLQLMGEYYKRWLDRTHVRIEAKDIQL 977


>SB_51707| Best HMM Match : TP2 (HMM E-Value=6.3)
          Length = 396

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = -3

Query: 352 HTNNSDPGYQVDMLITGDDK---DGKVTHDAGHSVLMQGILIAVKRWSMTAS*PLRLIR 185
           HT N  P +   +  T +      G +TH    S L  GI+   K    T S P  L R
Sbjct: 77  HTKNQSPSFSGTITHTKNQSPSFSGTITHTKNQSALGPGIITYDKSTGATGSTPKHLAR 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,893,108
Number of Sequences: 59808
Number of extensions: 520365
Number of successful extensions: 1177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)